ID Chromosome Position Reference allele Variant allele VAF Gene name Region AA COSMIC Species Gender Age(years) Tissue/Cell type Single-cell genomics biotechnology/Method Control sample/tissue ID_2_individual_1_single-cell_1 chr1 70939090 C T - - intergenic - - human female fetus(15 weeks) brain/neuron(basal ganglia,BG) whole genome sequencing(single-stem-cell clonal culture) brain or spleen ID_2_individual_1_single-cell_1 chr1 76834478 T A - ST6GALNAC3 intron - - human female fetus(15 weeks) brain/neuron(basal ganglia,BG) whole genome sequencing(single-stem-cell clonal culture) brain or spleen ID_2_individual_1_single-cell_1 chr1 82278587 C A - LPHN2 utr-5 - - human female fetus(15 weeks) brain/neuron(basal ganglia,BG) whole genome sequencing(single-stem-cell clonal culture) brain or spleen ID_2_individual_1_single-cell_1 chr1 154259629 C A - - intergenic - - human female fetus(15 weeks) brain/neuron(basal ganglia,BG) whole genome sequencing(single-stem-cell clonal culture) brain or spleen ID_2_individual_1_single-cell_1 chr1 189295202 A T - - intergenic - - human female fetus(15 weeks) brain/neuron(basal ganglia,BG) whole genome sequencing(single-stem-cell clonal culture) brain or spleen ID_2_individual_1_single-cell_1 chr1 214125923 G C - - intergenic - - human female fetus(15 weeks) brain/neuron(basal ganglia,BG) whole genome sequencing(single-stem-cell clonal culture) brain or spleen ID_2_individual_1_single-cell_1 chr2 14481864 C T - - intergenic - - human female fetus(15 weeks) brain/neuron(basal ganglia,BG) whole genome sequencing(single-stem-cell clonal culture) brain or spleen ID_2_individual_1_single-cell_1 chr2 15230325 G A - - intergenic - - human female fetus(15 weeks) brain/neuron(basal ganglia,BG) whole genome sequencing(single-stem-cell clonal culture) brain or spleen ID_2_individual_1_single-cell_1 chr2 32927665 T C - TTC27 intron - - human female fetus(15 weeks) brain/neuron(basal ganglia,BG) whole genome sequencing(single-stem-cell clonal culture) brain or spleen ID_2_individual_1_single-cell_1 chr2 38549378 G T - ATL2 intron - - human female fetus(15 weeks) brain/neuron(basal ganglia,BG) whole genome sequencing(single-stem-cell clonal culture) brain or spleen ID_2_individual_1_single-cell_1 chr2 57554157 A G - - intergenic - - human female fetus(15 weeks) brain/neuron(basal ganglia,BG) whole genome sequencing(single-stem-cell clonal culture) brain or spleen ID_2_individual_1_single-cell_1 chr2 59807019 G A - - intergenic - - human female fetus(15 weeks) brain/neuron(basal ganglia,BG) whole genome sequencing(single-stem-cell clonal culture) brain or spleen ID_2_individual_1_single-cell_1 chr2 103439152 C T - - intergenic - - human female fetus(15 weeks) brain/neuron(basal ganglia,BG) whole genome sequencing(single-stem-cell clonal culture) brain or spleen ID_2_individual_1_single-cell_1 chr2 140356173 G A - - intergenic - - human female fetus(15 weeks) brain/neuron(basal ganglia,BG) whole genome sequencing(single-stem-cell clonal culture) brain or spleen ID_2_individual_1_single-cell_1 chr2 150053809 C A - LYPD6B intron - - human female fetus(15 weeks) brain/neuron(basal ganglia,BG) whole genome sequencing(single-stem-cell clonal culture) brain or spleen ID_2_individual_1_single-cell_1 chr3 32580020 G A - DYNC1LI1 intron - - human female fetus(15 weeks) brain/neuron(basal ganglia,BG) whole genome sequencing(single-stem-cell clonal culture) brain or spleen ID_2_individual_1_single-cell_1 chr3 71923369 G A - - intergenic - - human female fetus(15 weeks) brain/neuron(basal ganglia,BG) whole genome sequencing(single-stem-cell clonal culture) brain or spleen ID_2_individual_1_single-cell_1 chr3 124246470 G T - KALRN intron - - human female fetus(15 weeks) brain/neuron(basal ganglia,BG) whole genome sequencing(single-stem-cell clonal culture) brain or spleen ID_2_individual_1_single-cell_1 chr3 180235623 G C - - intergenic - - human female fetus(15 weeks) brain/neuron(basal ganglia,BG) whole genome sequencing(single-stem-cell clonal culture) brain or spleen ID_2_individual_1_single-cell_1 chr3 191251873 T A - - intergenic - - human female fetus(15 weeks) brain/neuron(basal ganglia,BG) whole genome sequencing(single-stem-cell clonal culture) brain or spleen ID_2_individual_1_single-cell_1 chr3 194094100 A C - - intergenic - - human female fetus(15 weeks) brain/neuron(basal ganglia,BG) whole genome sequencing(single-stem-cell clonal culture) brain or spleen ID_2_individual_1_single-cell_1 chr4 37763557 G A - - intergenic - - human female fetus(15 weeks) brain/neuron(basal ganglia,BG) whole genome sequencing(single-stem-cell clonal culture) brain or spleen ID_2_individual_1_single-cell_1 chr4 95230024 C A - HPGDS intron - - human female fetus(15 weeks) brain/neuron(basal ganglia,BG) whole genome sequencing(single-stem-cell clonal culture) brain or spleen ID_2_individual_1_single-cell_1 chr4 126566875 T C - - intergenic - - human female fetus(15 weeks) brain/neuron(basal ganglia,BG) whole genome sequencing(single-stem-cell clonal culture) brain or spleen ID_2_individual_1_single-cell_1 chr4 129532952 T A - - intergenic - - human female fetus(15 weeks) brain/neuron(basal ganglia,BG) whole genome sequencing(single-stem-cell clonal culture) brain or spleen ID_2_individual_1_single-cell_1 chr4 150959073 A G - - intergenic - - human female fetus(15 weeks) brain/neuron(basal ganglia,BG) whole genome sequencing(single-stem-cell clonal culture) brain or spleen ID_2_individual_1_single-cell_1 chr4 177084809 T G - WDR17 intron - - human female fetus(15 weeks) brain/neuron(basal ganglia,BG) whole genome sequencing(single-stem-cell clonal culture) brain or spleen ID_2_individual_1_single-cell_1 chr5 3916271 A G - - intergenic - - human female fetus(15 weeks) brain/neuron(basal ganglia,BG) whole genome sequencing(single-stem-cell clonal culture) brain or spleen ID_2_individual_1_single-cell_1 chr5 7101828 G A - - intergenic - - human female fetus(15 weeks) brain/neuron(basal ganglia,BG) whole genome sequencing(single-stem-cell clonal culture) brain or spleen ID_2_individual_1_single-cell_1 chr5 11583293 T C - CTNND2 intron - - human female fetus(15 weeks) brain/neuron(basal ganglia,BG) whole genome sequencing(single-stem-cell clonal culture) brain or spleen ID_2_individual_1_single-cell_1 chr5 43966937 A G - - intergenic - - human female fetus(15 weeks) brain/neuron(basal ganglia,BG) whole genome sequencing(single-stem-cell clonal culture) brain or spleen ID_2_individual_1_single-cell_1 chr5 107212302 C T - FBXL17 intron - - human female fetus(15 weeks) brain/neuron(basal ganglia,BG) whole genome sequencing(single-stem-cell clonal culture) brain or spleen ID_2_individual_1_single-cell_1 chr5 126861742 C A - PRRC1 intron - - human female fetus(15 weeks) brain/neuron(basal ganglia,BG) whole genome sequencing(single-stem-cell clonal culture) brain or spleen ID_2_individual_1_single-cell_1 chr5 130216443 G A - - intergenic - - human female fetus(15 weeks) brain/neuron(basal ganglia,BG) whole genome sequencing(single-stem-cell clonal culture) brain or spleen ID_2_individual_1_single-cell_1 chr5 155992020 C T - SGCD intron - - human female fetus(15 weeks) brain/neuron(basal ganglia,BG) whole genome sequencing(single-stem-cell clonal culture) brain or spleen ID_2_individual_1_single-cell_1 chr5 173006144 C A - - intergenic - - human female fetus(15 weeks) brain/neuron(basal ganglia,BG) whole genome sequencing(single-stem-cell clonal culture) brain or spleen ID_2_individual_1_single-cell_1 chr6 46711270 G T - - intergenic - - human female fetus(15 weeks) brain/neuron(basal ganglia,BG) whole genome sequencing(single-stem-cell clonal culture) brain or spleen ID_2_individual_1_single-cell_1 chr6 63025158 G A - - intergenic - - human female fetus(15 weeks) brain/neuron(basal ganglia,BG) whole genome sequencing(single-stem-cell clonal culture) brain or spleen ID_2_individual_1_single-cell_1 chr6 92625124 G C - - intergenic - - human female fetus(15 weeks) brain/neuron(basal ganglia,BG) whole genome sequencing(single-stem-cell clonal culture) brain or spleen ID_2_individual_1_single-cell_1 chr6 142118272 C T - - intergenic - - human female fetus(15 weeks) brain/neuron(basal ganglia,BG) whole genome sequencing(single-stem-cell clonal culture) brain or spleen ID_2_individual_1_single-cell_1 chr6 142767226 C A - GPR126 utr-3 - - human female fetus(15 weeks) brain/neuron(basal ganglia,BG) whole genome sequencing(single-stem-cell clonal culture) brain or spleen ID_2_individual_1_single-cell_1 chr7 62173449 C T - - intergenic - - human female fetus(15 weeks) brain/neuron(basal ganglia,BG) whole genome sequencing(single-stem-cell clonal culture) brain or spleen ID_2_individual_1_single-cell_1 chr7 89251820 C T - - intergenic - - human female fetus(15 weeks) brain/neuron(basal ganglia,BG) whole genome sequencing(single-stem-cell clonal culture) brain or spleen ID_2_individual_1_single-cell_1 chr7 108051045 T A - NRCAM utr-5 - - human female fetus(15 weeks) brain/neuron(basal ganglia,BG) whole genome sequencing(single-stem-cell clonal culture) brain or spleen ID_2_individual_1_single-cell_1 chr7 155334890 G A - - intergenic - - human female fetus(15 weeks) brain/neuron(basal ganglia,BG) whole genome sequencing(single-stem-cell clonal culture) brain or spleen ID_2_individual_1_single-cell_1 chr8 8705424 G C - MFHAS1 intron - - human female fetus(15 weeks) brain/neuron(basal ganglia,BG) whole genome sequencing(single-stem-cell clonal culture) brain or spleen ID_2_individual_1_single-cell_1 chr8 24023811 A G - - intergenic - - human female fetus(15 weeks) brain/neuron(basal ganglia,BG) whole genome sequencing(single-stem-cell clonal culture) brain or spleen ID_2_individual_1_single-cell_1 chr8 38942476 C G - ADAM9 intron - - human female fetus(15 weeks) brain/neuron(basal ganglia,BG) whole genome sequencing(single-stem-cell clonal culture) brain or spleen ID_2_individual_1_single-cell_1 chr8 41739339 C T - ANK1 intron - - human female fetus(15 weeks) brain/neuron(basal ganglia,BG) whole genome sequencing(single-stem-cell clonal culture) brain or spleen ID_2_individual_1_single-cell_1 chr8 77864368 A G - - intergenic - - human female fetus(15 weeks) brain/neuron(basal ganglia,BG) whole genome sequencing(single-stem-cell clonal culture) brain or spleen ID_2_individual_1_single-cell_1 chr8 93371228 C T - - intergenic - - human female fetus(15 weeks) brain/neuron(basal ganglia,BG) whole genome sequencing(single-stem-cell clonal culture) brain or spleen ID_2_individual_1_single-cell_1 chr8 107381214 C A - OXR1 intron - - human female fetus(15 weeks) brain/neuron(basal ganglia,BG) whole genome sequencing(single-stem-cell clonal culture) brain or spleen ID_2_individual_1_single-cell_1 chr8 114761697 G T - - intergenic - - human female fetus(15 weeks) brain/neuron(basal ganglia,BG) whole genome sequencing(single-stem-cell clonal culture) brain or spleen ID_2_individual_1_single-cell_1 chr8 116635051 A C - TRPS1 intron - - human female fetus(15 weeks) brain/neuron(basal ganglia,BG) whole genome sequencing(single-stem-cell clonal culture) brain or spleen ID_2_individual_1_single-cell_1 chr8 135104583 C A - - intergenic - - human female fetus(15 weeks) brain/neuron(basal ganglia,BG) whole genome sequencing(single-stem-cell clonal culture) brain or spleen ID_2_individual_1_single-cell_1 chr8 139789305 A G - COL22A1 intron - - human female fetus(15 weeks) brain/neuron(basal ganglia,BG) whole genome sequencing(single-stem-cell clonal culture) brain or spleen ID_2_individual_1_single-cell_1 chr9 35488477 A C - - intergenic - - human female fetus(15 weeks) brain/neuron(basal ganglia,BG) whole genome sequencing(single-stem-cell clonal culture) brain or spleen ID_2_individual_1_single-cell_1 chr9 99981813 A C - - intergenic - - human female fetus(15 weeks) brain/neuron(basal ganglia,BG) whole genome sequencing(single-stem-cell clonal culture) brain or spleen ID_2_individual_1_single-cell_1 chr9 106203470 C T - - intergenic - - human female fetus(15 weeks) brain/neuron(basal ganglia,BG) whole genome sequencing(single-stem-cell clonal culture) brain or spleen ID_2_individual_1_single-cell_1 chr9 119812897 C G - ASTN2 intron - - human female fetus(15 weeks) brain/neuron(basal ganglia,BG) whole genome sequencing(single-stem-cell clonal culture) brain or spleen ID_2_individual_1_single-cell_1 chr9 125077444 T C - MRRF intron - - human female fetus(15 weeks) brain/neuron(basal ganglia,BG) whole genome sequencing(single-stem-cell clonal culture) brain or spleen ID_2_individual_1_single-cell_1 chr10 44550271 G T - - intergenic - - human female fetus(15 weeks) brain/neuron(basal ganglia,BG) whole genome sequencing(single-stem-cell clonal culture) brain or spleen ID_2_individual_1_single-cell_1 chr10 84218560 A T - NRG3 intron - - human female fetus(15 weeks) brain/neuron(basal ganglia,BG) whole genome sequencing(single-stem-cell clonal culture) brain or spleen ID_2_individual_1_single-cell_1 chr10 105599047 G A - SH3PXD2A intron - - human female fetus(15 weeks) brain/neuron(basal ganglia,BG) whole genome sequencing(single-stem-cell clonal culture) brain or spleen ID_2_individual_1_single-cell_1 chr11 83595098 C T - DLG2 intron - - human female fetus(15 weeks) brain/neuron(basal ganglia,BG) whole genome sequencing(single-stem-cell clonal culture) brain or spleen ID_2_individual_1_single-cell_1 chr11 103843506 G A - PDGFD intron - - human female fetus(15 weeks) brain/neuron(basal ganglia,BG) whole genome sequencing(single-stem-cell clonal culture) brain or spleen ID_2_individual_1_single-cell_1 chr11 106482905 T A - - intergenic - - human female fetus(15 weeks) brain/neuron(basal ganglia,BG) whole genome sequencing(single-stem-cell clonal culture) brain or spleen ID_2_individual_1_single-cell_1 chr12 88080572 T C - - intergenic - - human female fetus(15 weeks) brain/neuron(basal ganglia,BG) whole genome sequencing(single-stem-cell clonal culture) brain or spleen ID_2_individual_1_single-cell_1 chr12 89749570 C G - - intergenic - - human female fetus(15 weeks) brain/neuron(basal ganglia,BG) whole genome sequencing(single-stem-cell clonal culture) brain or spleen ID_2_individual_1_single-cell_1 chr12 118164154 C T - KSR2 intron - - human female fetus(15 weeks) brain/neuron(basal ganglia,BG) whole genome sequencing(single-stem-cell clonal culture) brain or spleen ID_2_individual_1_single-cell_1 chr12 127855483 T C - - intergenic - - human female fetus(15 weeks) brain/neuron(basal ganglia,BG) whole genome sequencing(single-stem-cell clonal culture) brain or spleen ID_2_individual_1_single-cell_1 chr12 129958073 G A - TMEM132D intron - - human female fetus(15 weeks) brain/neuron(basal ganglia,BG) whole genome sequencing(single-stem-cell clonal culture) brain or spleen ID_2_individual_1_single-cell_1 chr13 19796001 A G - - intergenic - - human female fetus(15 weeks) brain/neuron(basal ganglia,BG) whole genome sequencing(single-stem-cell clonal culture) brain or spleen ID_2_individual_1_single-cell_1 chr13 35156942 T C - - intergenic - - human female fetus(15 weeks) brain/neuron(basal ganglia,BG) whole genome sequencing(single-stem-cell clonal culture) brain or spleen ID_2_individual_1_single-cell_1 chr13 73253745 G A - - intergenic - - human female fetus(15 weeks) brain/neuron(basal ganglia,BG) whole genome sequencing(single-stem-cell clonal culture) brain or spleen ID_2_individual_1_single-cell_1 chr13 83185180 G A - - intergenic - - human female fetus(15 weeks) brain/neuron(basal ganglia,BG) whole genome sequencing(single-stem-cell clonal culture) brain or spleen ID_2_individual_1_single-cell_1 chr14 63188335 A T - KCNH5 intron - - human female fetus(15 weeks) brain/neuron(basal ganglia,BG) whole genome sequencing(single-stem-cell clonal culture) brain or spleen ID_2_individual_1_single-cell_1 chr14 63188436 A G - KCNH5 intron - - human female fetus(15 weeks) brain/neuron(basal ganglia,BG) whole genome sequencing(single-stem-cell clonal culture) brain or spleen ID_2_individual_1_single-cell_1 chr14 94785774 A G - SERPINA6 utr-5 - - human female fetus(15 weeks) brain/neuron(basal ganglia,BG) whole genome sequencing(single-stem-cell clonal culture) brain or spleen ID_2_individual_1_single-cell_1 chr14 99181308 G T - C14orf177 utr-5 - - human female fetus(15 weeks) brain/neuron(basal ganglia,BG) whole genome sequencing(single-stem-cell clonal culture) brain or spleen ID_2_individual_1_single-cell_1 chr15 71326400 T C - LRRC49 intron - - human female fetus(15 weeks) brain/neuron(basal ganglia,BG) whole genome sequencing(single-stem-cell clonal culture) brain or spleen ID_2_individual_1_single-cell_1 chr15 81349337 T G - - intergenic - - human female fetus(15 weeks) brain/neuron(basal ganglia,BG) whole genome sequencing(single-stem-cell clonal culture) brain or spleen ID_2_individual_1_single-cell_1 chr15 99145657 G A - - intergenic - - human female fetus(15 weeks) brain/neuron(basal ganglia,BG) whole genome sequencing(single-stem-cell clonal culture) brain or spleen ID_2_individual_1_single-cell_1 chr16 21513188 C T - - intergenic - - human female fetus(15 weeks) brain/neuron(basal ganglia,BG) whole genome sequencing(single-stem-cell clonal culture) brain or spleen ID_2_individual_1_single-cell_1 chr16 26688248 G T - - intergenic - - human female fetus(15 weeks) brain/neuron(basal ganglia,BG) whole genome sequencing(single-stem-cell clonal culture) brain or spleen ID_2_individual_1_single-cell_1 chr16 88501723 G A - ZNF469 exon W->* - human female fetus(15 weeks) brain/neuron(basal ganglia,BG) whole genome sequencing(single-stem-cell clonal culture) brain or spleen ID_2_individual_1_single-cell_1 chr17 11299753 C T - SHISA6 intron - - human female fetus(15 weeks) brain/neuron(basal ganglia,BG) whole genome sequencing(single-stem-cell clonal culture) brain or spleen ID_2_individual_1_single-cell_1 chr17 52713553 C G - - intergenic - - human female fetus(15 weeks) brain/neuron(basal ganglia,BG) whole genome sequencing(single-stem-cell clonal culture) brain or spleen ID_2_individual_1_single-cell_1 chr17 71147539 G T - - intergenic - - human female fetus(15 weeks) brain/neuron(basal ganglia,BG) whole genome sequencing(single-stem-cell clonal culture) brain or spleen ID_2_individual_1_single-cell_1 chr18 15004015 G A - - intergenic - - human female fetus(15 weeks) brain/neuron(basal ganglia,BG) whole genome sequencing(single-stem-cell clonal culture) brain or spleen ID_2_individual_1_single-cell_1 chr18 37181353 T G - - intergenic - - human female fetus(15 weeks) brain/neuron(basal ganglia,BG) whole genome sequencing(single-stem-cell clonal culture) brain or spleen ID_2_individual_1_single-cell_1 chr18 55549187 T G - - intergenic - - human female fetus(15 weeks) brain/neuron(basal ganglia,BG) whole genome sequencing(single-stem-cell clonal culture) brain or spleen ID_2_individual_1_single-cell_1 chr18 73868184 C A - - intergenic - - human female fetus(15 weeks) brain/neuron(basal ganglia,BG) whole genome sequencing(single-stem-cell clonal culture) brain or spleen ID_2_individual_1_single-cell_1 chr19 13587067 C G - CACNA1A intron - - human female fetus(15 weeks) brain/neuron(basal ganglia,BG) whole genome sequencing(single-stem-cell clonal culture) brain or spleen ID_2_individual_1_single-cell_1 chr19 14393821 A T - - intergenic - - human female fetus(15 weeks) brain/neuron(basal ganglia,BG) whole genome sequencing(single-stem-cell clonal culture) brain or spleen ID_2_individual_1_single-cell_1 chr19 49908942 G A - CCDC155 intron - - human female fetus(15 weeks) brain/neuron(basal ganglia,BG) whole genome sequencing(single-stem-cell clonal culture) brain or spleen ID_2_individual_1_single-cell_1 chr19 54971642 C T - LENG8 intron - - human female fetus(15 weeks) brain/neuron(basal ganglia,BG) whole genome sequencing(single-stem-cell clonal culture) brain or spleen ID_2_individual_1_single-cell_1 chr20 54383440 C T - - intergenic - - human female fetus(15 weeks) brain/neuron(basal ganglia,BG) whole genome sequencing(single-stem-cell clonal culture) brain or spleen ID_2_individual_1_single-cell_1 chr22 31603094 C T - - intergenic - - human female fetus(15 weeks) brain/neuron(basal ganglia,BG) whole genome sequencing(single-stem-cell clonal culture) brain or spleen ID_2_individual_1_single-cell_1 chrX 19766140 G T - SH3KBP1 intron - - human female fetus(15 weeks) brain/neuron(basal ganglia,BG) whole genome sequencing(single-stem-cell clonal culture) brain or spleen ID_2_individual_1_single-cell_1 chrX 32634564 A T - DMD intron - - human female fetus(15 weeks) brain/neuron(basal ganglia,BG) whole genome sequencing(single-stem-cell clonal culture) brain or spleen ID_2_individual_1_single-cell_1 chrX 83070017 C A - - intergenic - - human female fetus(15 weeks) brain/neuron(basal ganglia,BG) whole genome sequencing(single-stem-cell clonal culture) brain or spleen ID_2_individual_1_single-cell_1 chrX 86571404 C T - - intergenic - - human female fetus(15 weeks) brain/neuron(basal ganglia,BG) whole genome sequencing(single-stem-cell clonal culture) brain or spleen ID_2_individual_1_single-cell_1 chrX 91464923 G T - PCDH11X intron - - human female fetus(15 weeks) brain/neuron(basal ganglia,BG) whole genome sequencing(single-stem-cell clonal culture) brain or spleen ID_2_individual_1_single-cell_1 chrX 107571866 G T - COL4A6 intron - - human female fetus(15 weeks) brain/neuron(basal ganglia,BG) whole genome sequencing(single-stem-cell clonal culture) brain or spleen ID_2_individual_1_single-cell_1 chrX 141158082 T A - - intergenic - - human female fetus(15 weeks) brain/neuron(basal ganglia,BG) whole genome sequencing(single-stem-cell clonal culture) brain or spleen ID_2_individual_1_single-cell_1 chrX 148835364 C T - - intergenic - - human female fetus(15 weeks) brain/neuron(basal ganglia,BG) whole genome sequencing(single-stem-cell clonal culture) brain or spleen ID_2_individual_1_single-cell_1 chrX 151016897 C G - - intergenic - - human female fetus(15 weeks) brain/neuron(basal ganglia,BG) whole genome sequencing(single-stem-cell clonal culture) brain or spleen